PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610759.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 552aa    MW: 61541.8 Da    PI: 7.8804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610759.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05144166123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_013610759.1 144 FVCEICNKGFQRDQNLQLHRRGH 166
                     89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-5143166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.48E-6143166No hitNo description
PROSITE profilePS5015710.949144166IPR007087Zinc finger, C2H2
SMARTSM003550.017144166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
SuperFamilySSF576673.48E-6216241No hitNo description
SMARTSM00355230221241IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MYLLNLLFVS VFLSVSVYIY LYIDLKFSFC LFLFFFLVHF FVSLKALVMM NEDILLHQQV  60
QQQEENMSNL TSASGDQASV SSGNRTEVSG SNYFPHHQQQ EEQQQFSVPE SQPQKKRRNQ  120
PGNPDPESEV IALSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRSNKEV  180
IRKKVYVCPG ASCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AIQSDCKAHS  240
KTCGTKEYRC DCGTLFSRRD SFITHRAFCE ALAEETAREV VIPQNQNHQP NPRMIHQSSS  300
SHHQAQPTMN VSSSSHNITN SLYFETNHNG TNNSNTSSNH LHTFPMKIEQ QQSNDHIINY  360
HHHSIPPWLA PQPQDLTSSN PNPSNGGGGG LFSLAASPAM SATALLQKAA QMGSTKTPPL  420
PPTTVSERSA HHNNLTTTMA AMMTSSSGFI SSTNNNQVLF QDYNASEFDH SGGEEAFDDT  480
FCGFLRTNVD TTTTSGSDKN KSGGGEGEEG LTRDFLGLRP LMSHNEILSF AGLGNCISGS  540
ASDQLHPKPW QG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170183KLKQRSNKEVIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAPTransfer from AT3G13810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610759.10.0PREDICTED: protein indeterminate-domain 11-like isoform X1
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A0D3ADV30.0A0A0D3ADV3_BRAOL; Uncharacterized protein
STRINGBra021510.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11